Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4097Hypothetical protein. (482 aa)    
Predicted Functional Partners:
CSIRO_1808
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.721
ccmF
Cytochrome c heme lyase subunit CcmF.
  
 
 0.694
CSIRO_3563
Hypothetical protein.
 
 
  0.631
CSIRO_4286
Adenylate cyclase.
     
  0.616
tadD
Flp pilus assembly protein TadD.
   
  0.559
CSIRO_2225
Hypothetical protein.
   
  0.559
CSIRO_0390
Hypothetical protein.
    
  0.527
CSIRO_1763
Hypothetical protein.
    
  0.527
CSIRO_3175
Hypothetical protein.
    
  0.527
CSIRO_4098
Hypothetical protein.
       0.523
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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