CSIRO_4136 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Score

CSIRO_4136

ABC transporter, ATP-binding protein. (549 aa)

Predicted Functional Partners:

CSIRO_4010

0.856

rpsO

0.803

rplM

0.791

rpmE

0.786

rpsP

0.785

rpmG

0.783

rpsR

0.781

rplU

0.776

rpsC

0.773

rplD

0.772

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_4010	CSIRO_4136	CSIRO_4010	CSIRO_4136	ABC transporter permease protein.	ABC transporter, ATP-binding protein.	0.856
CSIRO_4136	CSIRO_4010	CSIRO_4136	CSIRO_4010	ABC transporter, ATP-binding protein.	ABC transporter permease protein.	0.856
CSIRO_4136	rplD	CSIRO_4136	CSIRO_3499	ABC transporter, ATP-binding protein.	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	0.772
CSIRO_4136	rplM	CSIRO_4136	CSIRO_3219	ABC transporter, ATP-binding protein.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.791
CSIRO_4136	rplU	CSIRO_4136	CSIRO_0786	ABC transporter, ATP-binding protein.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.776
CSIRO_4136	rpmE	CSIRO_4136	CSIRO_1393	ABC transporter, ATP-binding protein.	LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.786
CSIRO_4136	rpmG	CSIRO_4136	CSIRO_3362	ABC transporter, ATP-binding protein.	LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.	0.783
CSIRO_4136	rpsC	CSIRO_4136	CSIRO_3494	ABC transporter, ATP-binding protein.	SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.773
CSIRO_4136	rpsO	CSIRO_4136	CSIRO_1127	ABC transporter, ATP-binding protein.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.803
CSIRO_4136	rpsP	CSIRO_4136	CSIRO_1085	ABC transporter, ATP-binding protein.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.785
CSIRO_4136	rpsR	CSIRO_4136	CSIRO_2610	ABC transporter, ATP-binding protein.	SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.781
rplD	CSIRO_4136	CSIRO_3499	CSIRO_4136	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	ABC transporter, ATP-binding protein.	0.772
rplD	rplM	CSIRO_3499	CSIRO_3219	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.997
rplD	rplU	CSIRO_3499	CSIRO_0786	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.991
rplD	rpmE	CSIRO_3499	CSIRO_1393	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.904
rplD	rpmG	CSIRO_3499	CSIRO_3362	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.	0.986
rplD	rpsC	CSIRO_3499	CSIRO_3494	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplD	rpsO	CSIRO_3499	CSIRO_1127	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997
rplD	rpsP	CSIRO_3499	CSIRO_1085	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.991
rplD	rpsR	CSIRO_3499	CSIRO_2610	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.991