CSIRO_4136 protein (Bradyrhizobiaceae bacterium SG6C)

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Predicted Interactions

gene neighborhood

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Score

CSIRO_4136

ABC transporter, ATP-binding protein. (549 aa)

Predicted Functional Partners:

rpsO

0.920

rplM

0.918

rpmE

0.914

rpmG

0.913

rpsR

0.912

rpsP

0.910

rplD

0.909

rplU

0.907

rpsC

0.906

rplC

0.905

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_4136	rplC	CSIRO_4136	CSIRO_3500	ABC transporter, ATP-binding protein.	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.905
CSIRO_4136	rplD	CSIRO_4136	CSIRO_3499	ABC transporter, ATP-binding protein.	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	0.909
CSIRO_4136	rplM	CSIRO_4136	CSIRO_3219	ABC transporter, ATP-binding protein.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.918
CSIRO_4136	rplU	CSIRO_4136	CSIRO_0786	ABC transporter, ATP-binding protein.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.907
CSIRO_4136	rpmE	CSIRO_4136	CSIRO_1393	ABC transporter, ATP-binding protein.	LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.914
CSIRO_4136	rpmG	CSIRO_4136	CSIRO_3362	ABC transporter, ATP-binding protein.	LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.	0.913
CSIRO_4136	rpsC	CSIRO_4136	CSIRO_3494	ABC transporter, ATP-binding protein.	SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.906
CSIRO_4136	rpsO	CSIRO_4136	CSIRO_1127	ABC transporter, ATP-binding protein.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.920
CSIRO_4136	rpsP	CSIRO_4136	CSIRO_1085	ABC transporter, ATP-binding protein.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.910
CSIRO_4136	rpsR	CSIRO_4136	CSIRO_2610	ABC transporter, ATP-binding protein.	SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.912
rplC	CSIRO_4136	CSIRO_3500	CSIRO_4136	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	ABC transporter, ATP-binding protein.	0.905
rplC	rplD	CSIRO_3500	CSIRO_3499	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	CSIRO_3500	CSIRO_3219	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplU	CSIRO_3500	CSIRO_0786	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L21p; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplC	rpmE	CSIRO_3500	CSIRO_1393	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L31p; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.	0.992
rplC	rpmG	CSIRO_3500	CSIRO_3362	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L33p; Belongs to the bacterial ribosomal protein bL33 family.	0.996
rplC	rpsC	CSIRO_3500	CSIRO_3494	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsO	CSIRO_3500	CSIRO_1127	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998
rplC	rpsP	CSIRO_3500	CSIRO_1085	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S16p; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rplC	rpsR	CSIRO_3500	CSIRO_2610	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	SSU ribosomal protein S18p; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.997