Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4140ErfK/YbiS/YcfS/YnhG-like protein. (406 aa)    
Predicted Functional Partners:
CSIRO_4283
Hypothetical protein.
  
     0.513
CSIRO_4139
3-demethylubiquinone-9 3-methyltransferase.
       0.503
CSIRO_0655
Putative exported protein.
 
   
 0.500
CSIRO_4282
YcjX-like protein.
  
     0.488
CSIRO_0591
Murein endopeptidase.
  
     0.472
CSIRO_1316
Signal recognition particle GTPase.
  
     0.464
CSIRO_2357
Transpeptidase / transglycosylase; Bifunctional.
  
  
 0.460
CSIRO_0382
Protein of unknown function DUF882.
 
     0.457
ftsI
Cell division protein FtsI.
  
  
 0.457
CSIRO_0381
Hypothetical protein.
 
   
 0.433
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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