STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4151Ornithine cyclodeaminase. (319 aa)    
Predicted Functional Partners:
CSIRO_1399
Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.825
CSIRO_4152
Putative URI domain-containing endonuclease.
       0.790
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.723
CSIRO_3889
Arginase; Belongs to the arginase family.
  
 
 0.717
CSIRO_3945
Serine--glyoxylate aminotransferase.
 
  
 0.698
CSIRO_1642
Ornithine decarboxylase/ Arginine decarboxylase; Bifunctional; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.697
CSIRO_2255
YbiC-like oxidoreductase; Belongs to the LDH2/MDH2 oxidoreductase family.
     
 0.666
CSIRO_2596
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.656
CSIRO_3817
Muconate cycloisomerase.
 
  
  0.656
argH
Argininosuccinate lyase.
    
 0.653
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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