Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4158TPR domain-containing protein. (661 aa)    
Predicted Functional Partners:
CSIRO_0272
TPR domain-containing protein.
 
 
 0.842
CSIRO_2433
Cellulose biosynthesis protein.
 
 
 0.786
CSIRO_3406
TPR repeat-containing protein.
 
 
0.761
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
     
  0.759
CSIRO_1849
Acetylspermidine deacetylase.
  
 
 0.756
CSIRO_2666
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
     
  0.708
CSIRO_4160
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
     
  0.708
CSIRO_1916
Cytochrome c family protein.
  
  
  0.703
CSIRO_3765
Hypothetical protein.
   
 0.696
CSIRO_4157
Hypothetical protein.
       0.663
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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