Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4171Tricarboxylate transport protein. (167 aa)    
Predicted Functional Partners:
CSIRO_4172
Tricarboxylate transport protein.
 
 
 0.944
CSIRO_4170
Tricarboxylate transport membrane protein.
 
 
 0.901
CSIRO_3944
Tricarboxylate transport protein.
 
 
 0.845
CSIRO_4029
Tricarboxylate transport protein.
  
  
  0.757
CSIRO_1264
Lipolytic enzyme.
  
     0.678
CSIRO_2187
Hypothetical protein.
     
  0.676
CSIRO_3942
Tricarboxylate transport membrane protein.
 
 
 0.661
CSIRO_4027
Tricarboxylate transport protein.
 
 
 0.570
CSIRO_0005
Putative exported protein.
 
 
 0.567
CSIRO_1371
Putative exported protein.
 
 
 0.549
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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