STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4177Transcriptional regulator; Associated with tricarboxylic transport. (241 aa)    
Predicted Functional Partners:
CSIRO_4176
Putative oxalyl-CoA decarboxylase; Belongs to the TPP enzyme family.
 
     0.819
CSIRO_1679
Transcriptional regulator, GntR family.
  
     0.759
CSIRO_2418
Hypothetical protein.
  
     0.754
CSIRO_4208
Transcriptional regulator, GntR family.
  
  
 0.708
frc
Formyl-coenzyme A transferase; Involved in the catabolism of oxalate and in the adapatation to low pH via the induction of the oxalate-dependent acid tolerance response (ATR). Catalyzes the transfer of the CoA moiety from formyl- CoA to oxalate; Belongs to the CoA-transferase III family. Frc subfamily.
 
     0.702
CSIRO_4169
Putative oxalate:formate antiporter.
  
     0.570
CSIRO_4178
acetyl-CoA synthetase (ADP-forming) alpha chain.
 
     0.547
CSIRO_2156
Transcriptional regulator, GntR family.
  
  
 0.470
CSIRO_4179
Transcriptional regulator, IclR family.
 
    0.432
CSIRO_4016
Acetolactate synthase small subunit.
   
    0.410
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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