Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_4180Glyoxylate carboligase; Belongs to the TPP enzyme family. (598 aa)    
Predicted Functional Partners:
CSIRO_4182
2-hydroxy-3-oxopropionate reductase.
 
 
 0.966
CSIRO_4181
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 
 0.957
CSIRO_4176
Putative oxalyl-CoA decarboxylase; Belongs to the TPP enzyme family.
 
  
 
0.905
CSIRO_0066
Putative acetolactate synthase large subunit; Belongs to the TPP enzyme family.
  
  
 
0.879
CSIRO_4017
Acetolactate synthase large subunit.
  
  
 
0.872
CSIRO_2517
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 
 0.834
CSIRO_4016
Acetolactate synthase small subunit.
  
  
  0.820
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
    
 0.810
CSIRO_4268
Hypothetical protein.
     
  0.809
CSIRO_3945
Serine--glyoxylate aminotransferase.
  
  
  0.803
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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