STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4191Hypothetical protein. (88 aa)    
Predicted Functional Partners:
cbpA
DnaJ-class molecular chaperone CbpA.
 
 
 0.944
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.780
CSIRO_4108
Hypothetical protein.
   
 0.766
CSIRO_2365
Sensory box histidine kinase/response regulator.
   
 0.755
CSIRO_2934
Sdenylate cyclase.
  
  
  0.718
CSIRO_0358
Diguanylate cyclase/phosphodiesterase.
    
 0.712
CSIRO_0589
Hypothetical protein.
    
 0.712
CSIRO_1389
Diguanylate cyclase/phosphodiesterase.
    
 0.712
CSIRO_2662
NAD-dependent malic enzyme.
    
 0.679
CSIRO_2327
methylmalonyl-CoA mutase.
     
 0.677
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.