STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4229Transcriptional regulator, IclR family. (135 aa)    
Predicted Functional Partners:
CSIRO_0399
Transcriptional regulator, IclR family.
  
     0.752
CSIRO_1972
Regulatory protein PcaR.
  
     0.745
CSIRO_3997
Transcriptional regulator, IclR family.
  
     0.736
CSIRO_2925
Allophanate hydrolase 2 subunit 1.
  
    0.684
CSIRO_2219
Prolidase.
 
  
 0.491
CSIRO_2662
NAD-dependent malic enzyme.
 
  
 0.491
CSIRO_1438
Transcriptional regulator, IclR family.
  
     0.484
CSIRO_2924
Allophanate hydrolase 2 subunit 2.
  
    0.484
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
    
 0.423
CSIRO_1851
Glyoxalase family protein.
  
 
  0.402
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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