Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_4262Hypothetical protein. (139 aa)    
Predicted Functional Partners:
CSIRO_1808
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.734
CSIRO_4286
Adenylate cyclase.
 
  
 0.727
CSIRO_1851
Glyoxalase family protein.
    
  0.681
CSIRO_3420
Quino(hemo)protein alcohol dehydrogenase.
     
 0.650
CSIRO_2099
Transcriptional regulator.
    
 0.618
CSIRO_2365
Sensory box histidine kinase/response regulator.
    
  0.574
CSIRO_4263
Hypothetical protein.
       0.569
CSIRO_3765
Hypothetical protein.
  
  
  0.479
CSIRO_1451
Hypothetical protein.
     
 0.465
CSIRO_4264
Hypothetical protein.
 
     0.458
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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