Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_4289Multidrug resistance transporter, Bcr/CflA family. (406 aa)    
Predicted Functional Partners:
CSIRO_1451
Hypothetical protein.
     
  0.719
CSIRO_2479
Acyl carrier protein.
     
  0.709
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
     
  0.709
CSIRO_1285
Integral membrane protein.
     
  0.598
CSIRO_0041
long-chain-fatty-acid--CoA ligase.
     
  0.510
CSIRO_0322
long-chain-fatty-acid--CoA ligase.
     
  0.510
CSIRO_0734
long-chain-fatty-acid--CoA ligase.
     
  0.510
CSIRO_1054
long-chain-fatty-acid--CoA ligase.
     
  0.510
CSIRO_1191
Crotonobetaine carnitine-CoA ligase.
     
  0.510
CSIRO_1237
long-chain-fatty-acid--CoA ligase.
     
  0.510
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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