STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIF83432.1Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)    
Predicted Functional Partners:
KIF83864.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
KIF81357.1
Transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.607
KIF79946.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
KIF82521.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
KIF80175.1
DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.526
KIF79945.1
ZIP family zinc transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.493
KIF80180.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.451
KIF81796.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.419
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.408
KIF83576.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.403
Your Current Organism:
Noviherbaspirillum autotrophicum
NCBI taxonomy Id: 709839
Other names: DSM 25787, Herbaspirillum sp. TSA66, Herbaspirillum sp. TSO23-1, JCM 17723, N. autotrophicum, Noviherbaspirillum autotrophicum Ishii et al. 2017, strain TSA66
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