STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIF79938.1Caa(3)-type oxidase subunit IV; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)    
Predicted Functional Partners:
KIF79935.1
Cytochrome B561; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
  0.979
KIF83437.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.949
KIF79937.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.946
KIF79936.1
Cytochrome c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
 
  
  0.921
KIF81920.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase family.
   
 0.884
KIF79933.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.837
KIF83436.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.836
KIF79939.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.822
KIF79934.1
Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.819
KIF83645.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.776
Your Current Organism:
Noviherbaspirillum autotrophicum
NCBI taxonomy Id: 709839
Other names: DSM 25787, Herbaspirillum sp. TSA66, Herbaspirillum sp. TSO23-1, JCM 17723, N. autotrophicum, Noviherbaspirillum autotrophicum Ishii et al. 2017, strain TSA66
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