STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIF81044.1Hydrogenase maturation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)    
Predicted Functional Partners:
KIF84006.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.973
KIF80972.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.973
KIF83889.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.973
KIF80564.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.972
KIF80183.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.968
KIF83488.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.968
KIF84000.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.956
KIF80588.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.953
KIF83719.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.951
rplB
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
  
 
 0.914
Your Current Organism:
Noviherbaspirillum autotrophicum
NCBI taxonomy Id: 709839
Other names: DSM 25787, Herbaspirillum sp. TSA66, Herbaspirillum sp. TSO23-1, JCM 17723, N. autotrophicum, Noviherbaspirillum autotrophicum Ishii et al. 2017, strain TSA66
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