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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL91215.1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)    
Predicted Functional Partners:
KPL91216.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.945
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.911
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.882
KPL91668.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.879
KPL91667.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.829
KPL87571.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.735
KPL85485.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.713
KPL85651.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.644
KPL81463.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.635
KPL81269.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.613
Your Current Organism:
Herpetosiphon geysericola
NCBI taxonomy Id: 70996
Other names: ATCC 23076, CCUG 48727, DSM 7119, H. geysericola, Herpetosiphon geysericolus
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