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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL88948.1ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)    
Predicted Functional Partners:
KPL88950.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.953
KPL88949.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.949
KPL86252.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.946
KPL80128.1
Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 0.881
KPL81947.1
Lactose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.862
KPL81946.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.855
KPL86841.1
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.850
KPL86860.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.845
KPL86021.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.845
KPL79524.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.835
Your Current Organism:
Herpetosiphon geysericola
NCBI taxonomy Id: 70996
Other names: ATCC 23076, CCUG 48727, DSM 7119, H. geysericola, Herpetosiphon geysericolus
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