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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL85301.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)    
Predicted Functional Partners:
KPL85300.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.979
KPL85298.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.958
KPL85297.1
Type II secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.949
KPL85427.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.857
KPL85522.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.819
KPL85523.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.819
KPL85299.1
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.818
KPL85322.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.724
KPL88135.1
Anti-sigma factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anti-sigma-factor antagonist family.
   
    0.665
KPL85296.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.624
Your Current Organism:
Herpetosiphon geysericola
NCBI taxonomy Id: 70996
Other names: ATCC 23076, CCUG 48727, DSM 7119, H. geysericola, Herpetosiphon geysericolus
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