Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADV68435.1Anti-sigma-K factor RskA; InterPro IPR018764; KEGG: ddr:Deide_07533 putative anti-sigmaE protein; PFAM: Anti-sigma K factor RskA; SPTR: Putative uncharacterized protein; PFAM: Anti-sigma-K factor rskA. (238 aa)    
Predicted Functional Partners:
ADV68434.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR007630: IPR014284; KEGG: dge:Dgeo_0606 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
   
 
 0.887
tatA-3
Sec-independent protein translocase protein tatA/E-like protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.655
ADV66243.1
Hypothetical protein; InterPro IPR011717: IPR001867; KEGG: ddr:Deide_2p02180 putative transcriptional regulator; SPTR: Putative transcriptional regulator.
  
     0.438
ADV67572.1
InterPro IPR006311; KEGG: ddr:Deide_07540 putative desiccation-associated protein, precursor; SPTR: Putative Desiccation-associated protein.
 
     0.435
ADV68432.1
RNA methylase; COGs: COG0116 N6-adenine-specific DNA methylase; InterPro IPR000241; KEGG: ddr:Deide_03840 putative N6-adenine-specific DNA methylase; putative RNA methylase; PFAM: Putative RNA methylase; SPTR: Putative N6-adenine-specific DNA methylase; putative RNA methylase; PFAM: Putative RNA methylase family UPF0020.
       0.434
ADV68856.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: dge:Dgeo_1519 ECF subfamily RNA polymerase sigma-24 factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
   
 
 0.432
Your Current Organism:
Deinococcus maricopensis
NCBI taxonomy Id: 709986
Other names: D. maricopensis DSM 21211, Deinococcus maricopensis DSM 21211, Deinococcus maricopensis LB-34, Deinococcus maricopensis str. DSM 21211, Deinococcus maricopensis strain DSM 21211
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