STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIV95875.1Transcriptional regulator; PFAM: MarR family. (168 aa)    
Predicted Functional Partners:
EIV95877.1
Cysteine desulfurase family protein; PFAM: Aminotransferase class-V.
       0.782
EIV95876.1
PFAM: Glycosyl transferase family 2; TIGRFAM: mycofactocin system glycosyltransferase.
       0.779
EIV91719.1
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain; PFAM: DJ-1/PfpI family.
   
    0.720
EIV90932.1
Putative transcriptional regulator; PFAM: Bacterial regulatory protein, arsR family.
   
    0.688
cobB
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.622
EIV91706.1
NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family.
   
    0.622
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.610
EIV91027.1
Putative ATPase; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal; NB-ARC domain.
   
    0.596
EIV95879.1
Hypothetical protein.
 
     0.538
EIV90783.1
PFAM: Cell envelope-related transcriptional attenuator domain; TIGRFAM: cell envelope-related function transcriptional attenuator common domain; manually curated; partial gene.
   
    0.521
Your Current Organism:
Frankia sp. QA3
NCBI taxonomy Id: 710111
Other names: F. sp. QA3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.