B5V51_7672 protein (Heliothis virescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B5V51_7672

Uncharacterized protein. (343 aa)

Predicted Functional Partners:

B5V51_5847

0.540

B5V51_12690

0.513

B5V51_1767

0.453

B5V51_2688

0.453

B5V51_2694

0.449

B5V51_4494

0.440

B5V51_10200

0.432

B5V51_13805

0.424

B5V51_2308

0.423

B5V51_3553

0.422

Your Current Organism:

Heliothis virescens

NCBI taxonomy Id: 7102
Other names: Chloridea virescens, H. virescens, Helicoverpa virescens, tobacco budworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5V51_10200	B5V51_7672	A0A2A4JXE7	A0A2A4J2S9	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family.	Uncharacterized protein.	0.432
B5V51_12690	B5V51_2308	A0A2A4IVS9	A0A2A4K9A3	Alpha_adaptin_C domain-containing protein.	PID domain-containing protein.	0.778
B5V51_12690	B5V51_5847	A0A2A4IVS9	A0A2A4J8Z2	Alpha_adaptin_C domain-containing protein.	AP complex subunit beta.	0.996
B5V51_12690	B5V51_7672	A0A2A4IVS9	A0A2A4J2S9	Alpha_adaptin_C domain-containing protein.	Uncharacterized protein.	0.513
B5V51_13805	B5V51_1767	A0A2A4K6U8	A0A2A4JIC2	Ribosomal_L18e/L15P domain-containing protein.	Uncharacterized protein.	0.994
B5V51_13805	B5V51_3553	A0A2A4K6U8	A0A2A4JDX4	Ribosomal_L18e/L15P domain-containing protein.	GOLD domain-containing protein.	0.942
B5V51_13805	B5V51_5847	A0A2A4K6U8	A0A2A4J8Z2	Ribosomal_L18e/L15P domain-containing protein.	AP complex subunit beta.	0.442
B5V51_13805	B5V51_7672	A0A2A4K6U8	A0A2A4J2S9	Ribosomal_L18e/L15P domain-containing protein.	Uncharacterized protein.	0.424
B5V51_1767	B5V51_13805	A0A2A4JIC2	A0A2A4K6U8	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.994
B5V51_1767	B5V51_2308	A0A2A4JIC2	A0A2A4K9A3	Uncharacterized protein.	PID domain-containing protein.	0.402
B5V51_1767	B5V51_3553	A0A2A4JIC2	A0A2A4JDX4	Uncharacterized protein.	GOLD domain-containing protein.	0.916
B5V51_1767	B5V51_5847	A0A2A4JIC2	A0A2A4J8Z2	Uncharacterized protein.	AP complex subunit beta.	0.960
B5V51_1767	B5V51_7672	A0A2A4JIC2	A0A2A4J2S9	Uncharacterized protein.	Uncharacterized protein.	0.453
B5V51_2308	B5V51_12690	A0A2A4K9A3	A0A2A4IVS9	PID domain-containing protein.	Alpha_adaptin_C domain-containing protein.	0.778
B5V51_2308	B5V51_1767	A0A2A4K9A3	A0A2A4JIC2	PID domain-containing protein.	Uncharacterized protein.	0.402
B5V51_2308	B5V51_5847	A0A2A4K9A3	A0A2A4J8Z2	PID domain-containing protein.	AP complex subunit beta.	0.785
B5V51_2308	B5V51_7672	A0A2A4K9A3	A0A2A4J2S9	PID domain-containing protein.	Uncharacterized protein.	0.423
B5V51_2688	B5V51_7672	A0A2A4K4S6	A0A2A4J2S9	Ig-like domain-containing protein.	Uncharacterized protein.	0.453
B5V51_2694	B5V51_7672	A0A2A4K5H7	A0A2A4J2S9	Uncharacterized protein.	Uncharacterized protein.	0.449
B5V51_3553	B5V51_13805	A0A2A4JDX4	A0A2A4K6U8	GOLD domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein.	0.942