Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFM15191.1 | AFM15192.1 | Mycch_0368 | Mycch_0369 | PFAM: Prolyl oligopeptidase family. | PFAM: ATP-grasp domain. | 0.773 |
AFM15192.1 | AFM15191.1 | Mycch_0369 | Mycch_0368 | PFAM: ATP-grasp domain. | PFAM: Prolyl oligopeptidase family. | 0.773 |
AFM15192.1 | AFM15244.1 | Mycch_0369 | Mycch_0424 | PFAM: ATP-grasp domain. | Hypothetical protein. | 0.755 |
AFM15192.1 | AFM17171.1 | Mycch_0369 | Mycch_2397 | PFAM: ATP-grasp domain. | Hypothetical protein. | 0.915 |
AFM15192.1 | carA | Mycch_0369 | Mycch_2398 | PFAM: ATP-grasp domain. | PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family. | 0.958 |
AFM15192.1 | pyrB | Mycch_0369 | Mycch_2395 | PFAM: ATP-grasp domain. | PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.776 |
AFM15192.1 | pyrC | Mycch_0369 | Mycch_2396 | PFAM: ATP-grasp domain. | Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.806 |
AFM15192.1 | pyrD | Mycch_0369 | Mycch_3140 | PFAM: ATP-grasp domain. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.806 |
AFM15192.1 | pyrE | Mycch_0369 | Mycch_5081 | PFAM: ATP-grasp domain. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.755 |
AFM15192.1 | pyrF | Mycch_0369 | Mycch_2400 | PFAM: ATP-grasp domain. | PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.776 |
AFM15192.1 | pyrR | Mycch_0369 | Mycch_2394 | PFAM: ATP-grasp domain. | Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.743 |
AFM15244.1 | AFM15192.1 | Mycch_0424 | Mycch_0369 | Hypothetical protein. | PFAM: ATP-grasp domain. | 0.755 |
AFM15244.1 | AFM17171.1 | Mycch_0424 | Mycch_2397 | Hypothetical protein. | Hypothetical protein. | 0.766 |
AFM15244.1 | carA | Mycch_0424 | Mycch_2398 | Hypothetical protein. | PFAM: Carbamoyl-phosphate synthase small chain, CPSase domain; Glutamine amidotransferase class-I; TIGRFAM: carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family. | 0.808 |
AFM15244.1 | pyrB | Mycch_0424 | Mycch_2395 | Hypothetical protein. | PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; TIGRFAM: aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.845 |
AFM15244.1 | pyrC | Mycch_0424 | Mycch_2396 | Hypothetical protein. | Dihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.845 |
AFM15244.1 | pyrD | Mycch_0424 | Mycch_3140 | Hypothetical protein. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.870 |
AFM15244.1 | pyrE | Mycch_0424 | Mycch_5081 | Hypothetical protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.400 |
AFM15244.1 | pyrF | Mycch_0424 | Mycch_2400 | Hypothetical protein. | PFAM: Orotidine 5'-phosphate decarboxylase / HUMPS family; TIGRFAM: orotidine 5'-phosphate decarboxylase, subfamily 2; Belongs to the OMP decarboxylase family. Type 2 subfamily. | 0.853 |
AFM15244.1 | pyrR | Mycch_0424 | Mycch_2394 | Hypothetical protein. | Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.790 |
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