STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46593.1KEGG: ami:Amir_0885 hypothetical protein; SPTR: Putative uncharacterized protein. (150 aa)    
Predicted Functional Partners:
ADU46592.1
KEGG: sen:SACE_1595 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.959
ADU46594.1
KEGG: ami:Amir_0884 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.958
ADU46591.1
KEGG: saq:Sare_4736 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.937
ADU46587.1
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: fre:Franean1_0907 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: DNA-binding protein; PFAM: Helix-turn-helix.
 
     0.842
ADU46589.1
NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: sco:SCO3511 lipoprotein; PFAM: NLP/P60 protein; SPTR: NLP/P60 protein; PFAM: NlpC/P60 family.
 
     0.818
ADU46588.1
KEGG: sna:Snas_0838 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.793
ADU46590.1
KEGG: amd:AMED_1188 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
ADU46585.1
InterPro IPR011701; KEGG: sro:Sros_4222 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Antibiotic transporter; PFAM: Bacterial protein of unknown function (DUF894).
       0.714
ADU46586.1
Protein of unknown function DUF397; InterPro IPR007278; KEGG: tbi:Tbis_0235 hypothetical protein; PFAM: protein of unknown function DUF397; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF397).
       0.714
ADU48323.1
RNA methyltransferase, TrmH family, group 3; COGs: COG0566 rRNA methylase; InterPro IPR013123: IPR001537: IPR004441; KEGG: ami:Amir_6302 RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; SPTR: RNA methyltransferase, TrmH family, group 3; TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: SpoU rRNA Methylase family; RNA 2'-O ribose methyltransferase substrate binding; TIGRFAM: rRNA methylase, putative, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA meth [...]
  
     0.666
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.