STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46604.1Helix-turn-helix domain protein; InterPro IPR001387; KEGG: rce:RC1_3111 DNA-binding protein, putative; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: DNA-binding protein, putative; PFAM: Helix-turn-helix. (89 aa)    
Predicted Functional Partners:
ADU46605.1
HipA N-terminal domain protein; COGs: COG3550 conserved hypothetical protein; InterPro IPR012894: IPR012893: IPR017508; KEGG: mva:Mvan_1137 HipA domain-containing protein; PFAM: HipA domain protein; SPTR: HipA domain protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; TIGRFAM: HipA N-terminal domain.
 
 
 0.960
ADU47960.1
HipA N-terminal domain protein; COGs: COG3550 conserved hypothetical protein; InterPro IPR017508: IPR012894: IPR012893; KEGG: kfl:Kfla_0789 HipA N-terminal domain protein; PFAM: HipA domain protein; SPTR: HipA N-terminal domain protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; TIGRFAM: HipA N-terminal domain.
 
 
 0.802
ADU46852.1
KEGG: mpa:MAP3182 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.512
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.