STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46730.1COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: kra:Krad_0170 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2. (250 aa)    
Predicted Functional Partners:
ADU46729.1
KEGG: kse:Ksed_01600 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.813
ADU48084.1
KEGG: kfl:Kfla_5416 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.782
ADU48082.1
COGs: COG4825 Uncharacterized membrane-anchored protein; InterPro IPR007371; KEGG: cfl:Cfla_1660 thiamin pyrophosphokinase catalytic region; PFAM: Thiamin pyrophosphokinase catalytic domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thiamine pyrophosphokinase C terminal.
 
     0.777
ADU48289.1
KEGG: kra:Krad_1878 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.776
ADU46731.1
KEGG: tcu:Tcur_0118 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.752
ADU48083.1
KEGG: kra:Krad_3145 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3186).
 
     0.668
ADU48085.1
COGs: COG0728 membrane protein putative virulence factor; InterPro IPR004268; KEGG: gob:Gobs_3004 virulence factor MviN family protein; PFAM: virulence factor MVIN family protein; SPTR: Uncharacterized membrane protein putative virulence factor-like protein; PFAM: MviN-like protein.
 
   
 0.637
ADU46728.1
ATP-binding region ATPase domain protein; InterPro IPR003594; KEGG: tcu:Tcur_0095 putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region ATPase domain protein; SPTR: Putative regulatory protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.606
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
  
 0.549
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
  
 0.542
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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