STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46730.1COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR001173; KEGG: kra:Krad_0170 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2. (250 aa)    
Predicted Functional Partners:
ADU46729.1
KEGG: kse:Ksed_01600 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.821
ADU48084.1
KEGG: kfl:Kfla_5416 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.788
ADU48082.1
COGs: COG4825 Uncharacterized membrane-anchored protein; InterPro IPR007371; KEGG: cfl:Cfla_1660 thiamin pyrophosphokinase catalytic region; PFAM: Thiamin pyrophosphokinase catalytic domain-containing protein; SPTR: Putative uncharacterized protein; PFAM: Thiamine pyrophosphokinase C terminal.
 
     0.778
ADU48289.1
KEGG: kra:Krad_1878 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.776
ADU46731.1
KEGG: tcu:Tcur_0118 hypothetical protein; SPTR: Putative uncharacterized protein.
     0.753
ADU48083.1
KEGG: kra:Krad_3145 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3186).
 
     0.671
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
  
 
 0.656
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
      
 0.641
ADU49107.1
Succinyldiaminopimelate desuccinylase; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; InterPro IPR010174: IPR002933: IPR011650; KEGG: kra:Krad_1143 succinyl-diaminopimelate desuccinylase; PFAM: peptidase M20; peptidase dimerisation domain protein; SPTR: Succinyl-diaminopimelate desuccinylase; TIGRFAM: succinyl-diaminopimelate desuccinylase; PFAM: Peptidase family M20/M25/M40; Peptidase dimerisation domain; TIGRFAM: succinyl-diaminopimelate desuccinylase.
  
 
 0.639
ADU48085.1
COGs: COG0728 membrane protein putative virulence factor; InterPro IPR004268; KEGG: gob:Gobs_3004 virulence factor MviN family protein; PFAM: virulence factor MVIN family protein; SPTR: Uncharacterized membrane protein putative virulence factor-like protein; PFAM: MviN-like protein.
 
   
 0.632
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.