STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46755.1YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: pfo:Pfl01_2519 DGPFAETKE; PFAM: YCII-related; SPTR: Conserved DGPFAETKE domain protein; PFAM: YCII-related domain. (146 aa)    
Predicted Functional Partners:
ADU46756.1
RNA polymerase, sigma subunit, ECF family; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR007627: IPR013249: IPR014284; KEGG: cwo:Cwoe_0348 putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
   
 0.920
ADU46758.1
Amidohydrolase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: bja:blr0249 hypothetical protein; PFAM: amidohydrolase; SPTR: Amidohydrolase; PFAM: Amidohydrolase family.
 
     0.546
ADU47503.1
InterPro IPR019587; KEGG: kse:Ksed_03110 polyketide cyclase / dehydrase and lipid transport; PFAM: Polyketide cyclase/dehydrase; SPTR: Polyketide cyclase / dehydrase and lipid transport; PFAM: Polyketide cyclase / dehydrase and lipid transport.
 
     0.534
ADU46754.1
HAD-superfamily hydrolase, subfamily IIB; COGs: COG0561 hydrolase of the HAD superfamily; InterPro IPR013200: IPR006379: IPR000150; KEGG: cfl:Cfla_3183 HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; SPTR: Hydrolase (HAD superfamily protein); TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB.
       0.506
ADU46757.1
KEGG: bja:blr0248 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uracil DNA glycosylase superfamily.
       0.435
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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