STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46757.1KEGG: bja:blr0248 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uracil DNA glycosylase superfamily. (307 aa)    
Predicted Functional Partners:
ADU46758.1
Amidohydrolase; COGs: COG0402 Cytosine deaminase and related metal-dependent hydrolase; InterPro IPR006680; KEGG: bja:blr0249 hypothetical protein; PFAM: amidohydrolase; SPTR: Amidohydrolase; PFAM: Amidohydrolase family.
       0.788
ADU46756.1
RNA polymerase, sigma subunit, ECF family; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR007627: IPR013249: IPR014284; KEGG: cwo:Cwoe_0348 putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.556
ADU47532.1
Peptidase M22 glycoprotease; COGs: COG1214 Inactive homolog of metal-dependent protease putative molecular chaperone; InterPro IPR000905; KEGG: sgr:SGR_2781 hypothetical protein; PFAM: peptidase M22 glycoprotease; SPTR: Putative uncharacterized protein; PFAM: Glycoprotease family; TIGRFAM: universal bacterial protein YeaZ.
  
    0.515
gpmA
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
  
    0.458
ADU46755.1
YCII-related protein; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: pfo:Pfl01_2519 DGPFAETKE; PFAM: YCII-related; SPTR: Conserved DGPFAETKE domain protein; PFAM: YCII-related domain.
       0.435
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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