STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46797.1InterPro IPR007253; KEGG: ace:Acel_1487 cell wall binding repeat 2-containing protein; PFAM: cell wall binding repeat 2-containing protein; SPTR: LytC; PFAM: Putative cell wall binding repeat 2. (283 aa)    
Predicted Functional Partners:
ADU46795.1
Phenylacetic acid degradation protein paaN; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR015590: IPR011975; KEGG: kse:Ksed_01930 phenylacetic acid degradation protein PaaN; PFAM: Aldehyde Dehydrogenase; SPTR: Phenylacetic acid degradation protein paaN; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde dehydrogenase family; TIGRFAM: phenylacetic acid degradation protein paaN.
 
    0.479
ADU46796.1
InterPro IPR011701; KEGG: nca:Noca_2339 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Putative transporter; PFAM: Major Facilitator Superfamily.
       0.454
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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