STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46827.1phospholipase/Carboxylesterase; COGs: COG0400 esterase; InterPro IPR003140; KEGG: nca:Noca_2054 phospholipase/carboxylesterase; PFAM: phospholipase/Carboxylesterase; SPTR: Phospholipase/Carboxylesterase; PFAM: Phospholipase/Carboxylesterase. (210 aa)    
Predicted Functional Partners:
ADU46828.1
NADP oxidoreductase coenzyme F420-dependent; COGs: COG2085 dinucleotide-binding protein; InterPro IPR004455; KEGG: rxy:Rxyl_1793 reduced coenzyme F420:NADP oxidoreductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; SPTR: Putative reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent.
       0.792
ADU46829.1
Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835; KEGG: scb:SCAB_86641 putative MarR family regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Transcriptional regulator; PFAM: MarR family.
 
     0.625
ADU46826.1
COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006091: IPR006090; KEGG: kse:Ksed_26500 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain.
   
 
 0.491
ADU48726.1
Cna B domain protein; InterPro IPR017909: IPR008454; KEGG: mes:Meso_0048 hypothetical protein; PFAM: Cna B domain protein; SPTR: Conserved repeat domain; PFAM: Cna protein B-type domain.
  
     0.462
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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