STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46844.1Hypothetical protein; KEGG: rrs:RoseRS_4025 NB-ARC domain-containing protein; SPTR: Putative WD-40 repeat protein. (340 aa)    
Predicted Functional Partners:
ADU47191.1
COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: kra:Krad_0611 histone deacetylase superfamily; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Putative acetoin utilization protein; PFAM: Histone deacetylase domain.
   
 0.835
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.829
ADU48265.1
KEGG: sen:SACE_2204 phosphatidylinositol 3-and 4-kinase, catalytic; SPTR: Phosphatidylinositol 3-and 4-kinase, catalytic; PFAM: Phosphatidylinositol 3- and 4-kinase; TIGRFAM: conserved hypothetical protein.
    
 0.780
ADU46845.1
WD40 repeat, subgroup; InterPro IPR019781: IPR001680: IPR019782; KEGG: gob:Gobs_1160 WD40 repeat, subgroup; PFAM: WD40 repeat, subgroup; SPTR: WD40 repeat, subgroup; PFAM: WD domain, G-beta repeat.
       0.773
rplR
LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
   
  0.730
rplW
LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
  0.730
ADU48211.1
KEGG: sro:Sros_6098 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 
 0.727
ADU46843.1
COGs: COG2124 Cytochrome P450; InterPro IPR001128: IPR017972: IPR002397; KEGG: gob:Gobs_1911 cytochrome P450; PFAM: cytochrome P450; SPTR: Cytochrome P450; PFAM: Cytochrome P450.
   
 0.723
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
 
 0.712
rpmD
COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR005996: IPR000517; KEGG: sro:Sros_1104 ribosomal protein L30p/L7e; PFAM: ribosomal protein L30; SPTR: 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle.
   
  0.621
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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