STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46880.1Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG4993 Glucose dehydrogenase; InterPro IPR019551: IPR002372: IPR018391; KEGG: scl:sce5403 putative polyvinylalcohol dehydrogenase; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; PQQ-dependent enzyme-like; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Putative polyvinylalcohol dehydrogenase; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; PQQ enzyme repeat. (520 aa)    
Predicted Functional Partners:
ADU46879.1
Hypothetical protein; KEGG: oaa:100084570 similar to Astacin-like metallo-endopeptidase (M12 family).
       0.636
glyQ
COGs: COG0751 Glycyl-tRNA synthetase beta subunit; InterPro IPR006194: IPR002310: IPR002311: IPR015944; KEGG: kfl:Kfla_5824 glycyl-tRNA synthetase, beta subunit; PFAM: glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase beta subunit; PRIAM: Glycine--tRNA ligase; SPTR: Glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit; glycyl-tRNA synthetase, alpha subunit; PFAM: Glycyl-tRNA synthetase beta subunit; Glycyl-tRNA synthetase alpha subunit; TIGRFAM: glycyl-tRNA synthetase, tetrameric type, beta subunit; glycyl-tRNA synthetase, tetrameric type, alph [...]
  
     0.458
ADU46878.1
Domain of unknown function DUF1994; COGs: COG2247 Putative cell wall-binding domain; InterPro IPR018532: IPR007253; KEGG: sna:Snas_5967 hypothetical protein; PFAM: Domain of unknown function DUF1994; cell wall binding repeat 2-containing protein; SPTR: Putative uncharacterized protein; PFAM: Putative cell wall binding repeat 2; Domain of unknown function (DUF1994).
       0.427
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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