STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46943.1KEGG: cfl:Cfla_0847 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial membrane flanked domain. (299 aa)    
Predicted Functional Partners:
ADU46944.1
KEGG: cfl:Cfla_0846 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.793
ADU49866.1
Membrane-flanked domain; COGs: COG3402 conserved hypothetical protein; InterPro IPR005182: IPR018313; KEGG: ami:Amir_1064 membrane-flanked domain protein; PFAM: membrane-flanked domain; SPTR: Membrane-flanked domain protein; PFAM: Bacterial membrane flanked domain.
 
  
 0.642
ADU48622.1
KEGG: ske:Sked_14030 hypothetical protein; SPTR: DNA primase.
  
     0.577
ADU48489.1
DNA polymerase III, epsilon subunit; COGs: COG0322 Nuclease subunit of the excinuclease complex; InterPro IPR013520: IPR000305: IPR006055: IPR006054; KEGG: kra:Krad_3247 hypothetical protein; PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; PRIAM: DNA-directed DNA polymerase; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease; GIY-YIG catalytic domain; TIGRFAM: exonuclease, DNA polymerase III, epsilon subunit family.
 
     0.565
ADU47063.1
Hypothetical protein; InterPro IPR019825; KEGG: bcv:Bcav_0618 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.530
ADU47893.1
KEGG: nca:Noca_3532 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.493
ADU46945.1
Ribosomal small subunit Rsm22; COGs: COG5459 rRNA methylase; InterPro IPR015324; KEGG: kfl:Kfla_2484 ribosomal small subunit Rsm22; PFAM: Ribosomal small subunit Rsm22; SPTR: Ribosomal small subunit Rsm22; PFAM: Mitochondrial small ribosomal subunit Rsm22.
       0.485
ADU47799.1
KEGG: tcu:Tcur_4083 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104).
  
     0.483
ADU46819.1
COGs: COG3336 membrane protein; InterPro IPR019108; KEGG: kse:Ksed_26540 predicted membrane protein; PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; SPTR: Putative uncharacterized protein; PFAM: Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG); Copper resistance protein D.
  
     0.467
ADU47149.1
KEGG: ske:Sked_32050 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3180).
 
     0.465
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.