STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU46960.1Protein of unknown function DUF853 NPT hydrolase; COGs: COG0433 ATPase; InterPro IPR008571; KEGG: krh:KRH_08710 hypothetical protein; PFAM: protein of unknown function DUF853 NPT hydrolase; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF853). (518 aa)    
Predicted Functional Partners:
ADU46959.1
L-carnitine dehydratase/bile acid-inducible protein F; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: gme:Gmet_1711 L-carnitine dehydratase/bile acid-inducible protein F; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: L-carnitine dehydratase/bile acid-inducible protein F; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family.
       0.773
ADU46961.1
Hypothetical protein; InterPro IPR014447; KEGG: xce:Xcel_0235 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.655
ADU48224.1
Protein of unknown function zinc metallopeptidase; COGs: COG2321 metalloprotease; InterPro IPR007343; KEGG: aau:AAur_2109 putative zinc metallopeptidase; PFAM: protein of unknown function zinc metallopeptidase; SPTR: Putative metalloprotease; PFAM: Putative neutral zinc metallopeptidase.
 
     0.581
ADU46962.1
KEGG: kse:Ksed_25980 hypothetical protein; SPTR: Putative membrane protein.
       0.553
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.501
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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