STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47039.1KEGG: nml:Namu_0724 protein of unknown function DUF1469; SPTR: Putative uncharacterized protein; manually curated; PFAM: Protein of unknown function (DUF1469). (195 aa)    
Predicted Functional Partners:
ADU47038.1
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073: IPR000639; KEGG: tbi:Tbis_0209 alpha/beta hydrolase fold protein; PFAM: alpha/beta hydrolase fold; SPTR: Hydrolase; PFAM: alpha/beta hydrolase fold.
       0.742
ADU47037.1
KEGG: lxx:Lxx01020 beta-lactamase related protein; SPTR: Beta-lactamase related protein.
 
     0.609
ADU47040.1
PEBP family protein; COGs: COG1881 Phospholipid-binding protein; InterPro IPR008914: IPR005247; KEGG: drt:Dret_1202 PEBP family protein; PFAM: PEBP family protein; SPTR: PEBP family protein; PFAM: Phosphatidylethanolamine-binding protein; TIGRFAM: Raf kinase inhibitor-like protein, YbhB/YbcL family.
       0.472
ADU46990.1
KEGG: nml:Namu_2441 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Polyketide cyclase / dehydrase and lipid transport.
 
     0.428
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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