STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47049.1Cobyrinic acid a,c-diamide synthase; COGs: COG0455 ATPase involved in chromosome partitioning; KEGG: ace:Acel_0975 cobyrinic acid a,c-diamide synthase; SPTR: Probable chromosome partitioning ATPase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain. (389 aa)    
Predicted Functional Partners:
ADU47051.1
Type II secretion system F domain; COGs: COG4965 Flp pilus assembly protein TadB; InterPro IPR002035: IPR018076; KEGG: tcu:Tcur_1851 type II secretion system protein; PFAM: Type II secretion system F domain; von Willebrand factor type A; SMART: von Willebrand factor type A; SPTR: Putative membrane protein; PFAM: von Willebrand factor type A domain; Bacterial type II secretion system protein F domain.
 
   
 0.951
ADU47052.1
Type II secretion system F domain; COGs: COG2064 Flp pilus assembly protein TadC; InterPro IPR018076; KEGG: tcu:Tcur_1850 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Probable secretion system protein TadC; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.949
ADU47050.1
Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482: IPR017975; KEGG: tcu:Tcur_1852 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: Flp pilus assembly protein TadA; PFAM: Type II/IV secretion system protein.
 
  
 0.946
ADU47048.1
InterPro IPR000169; KEGG: tcu:Tcur_1854 Flp pilus assembly protein CpaB; SPTR: Putative uncharacterized protein; TIGRFAM: Flp pilus assembly protein CpaB.
 
    0.943
ADU47047.1
KEGG: ach:Achl_4441 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.883
ADU47064.1
Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482: IPR017975; KEGG: kse:Ksed_25300 Flp pilus assembly protein, ATPase CpaF; PFAM: type II secretion system protein E; SPTR: Flp pilus assembly protein, ATPase CpaF; PFAM: Type II/IV secretion system protein; TIGRFAM: helicase/secretion neighborhood ATPase.
 
  
 0.639
ADU47804.1
Type II secretion system protein E; COGs: COG4962 Flp pilus assembly protein ATPase CpaF; InterPro IPR001482; KEGG: fre:Franean1_5826 type II secretion system protein E; PFAM: type II secretion system protein E; SPTR: Putative type II/type IV pathway secretion protein; PFAM: Type II/IV secretion system protein.
 
  
 0.587
ADU49271.1
KEGG: sma:SAV_5893 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.546
ADU47046.1
Flp/Fap pilin component; InterPro IPR007047; KEGG: art:Arth_2928 Flp/Fap pilin component; PFAM: Flp/Fap pilin component; SPTR: Flp/Fap pilin component; PFAM: Flp/Fap pilin component.
 
     0.515
ADU47008.1
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily; COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR007627: IPR007624: IPR007630: IPR000943: IPR 014322: IPR014284; KEGG: nca:Noca_1393 sigma-70 region 4 domain-containing protein; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; SPTR: Sigma-70 region 4 domain protein; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region 2; TIGRFA [...]
  
  
 0.496
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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