STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47109.1KEGG: cfl:Cfla_0472 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Anti-sigma-K factor rskA. (259 aa)    
Predicted Functional Partners:
ADU47111.1
InterPro IPR005754; KEGG: kfl:Kfla_4448 peptidase C60 sortase A and B; PFAM: peptidase C60 sortase A and B; SPTR: Peptidase C60 sortase A and B; PFAM: Sortase family; TIGRFAM: LPXTG-site transpeptidase (sortase) family protein.
 
     0.954
ADU47112.1
KEGG: kfl:Kfla_4449 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.943
ADU47110.1
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627: IPR013249: IPR000838: IPR014284; KEGG: kfl:Kfla_4447 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
 
     0.905
ADU48663.1
Binding-protein-dependent transport systems inner membrane component; COGs: COG1178 ABC-type Fe3+ transport system permease component; InterPro IPR000515; KEGG: sro:Sros_8129 iron ABC transporter, permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Iron ABC transporter, permease protein; manually curated; PFAM: Binding-protein-dependent transport system inner membrane component.
  
  
 0.791
ADU46678.1
InterPro IPR005754; KEGG: nml:Namu_4659 peptidase C60 sortase A and B; PFAM: peptidase C60 sortase A and B; SPTR: Peptidase C60 sortase A and B; PFAM: Sortase family.
 
     0.696
ADU47113.1
Amine oxidase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR002937; KEGG: kfl:Kfla_2764 amine oxidase; PFAM: amine oxidase; SPTR: Amine oxidase; PFAM: Flavin containing amine oxidoreductase.
 
     0.630
ADU48535.1
KEGG: ske:Sked_02620 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.566
ADU46680.1
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701: IPR005829; KEGG: gob:Gobs_1377 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1; PFAM: Sugar (and other) transporter.
  
  
 0.524
ADU47131.1
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701; KEGG: kfl:Kfla_6862 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Putative transmembrane transport protein; PFAM: Major Facilitator Superfamily.
  
  
 0.524
ADU46736.1
Iron permease FTR1; COGs: COG0672 High-affinity Fe2+/Pb2+ permease; InterPro IPR004923; KEGG: amd:AMED_8204 high-affinity iron transporter; PFAM: iron permease FTR1; SPTR: Putative membrane protein; PFAM: Iron permease FTR1 family; TIGRFAM: FTR1 family protein.
   
  
 0.493
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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