STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADU47279.1KEGG: kra:Krad_3610 hypothetical protein; SPTR: Putative uncharacterized protein. (779 aa)    
Predicted Functional Partners:
ADU47277.1
Helicase domain protein; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR014001: IPR001650: IPR014021: IPR006935; KEGG: ske:Sked_31430 DNA/RNA helicase, superfamily II; PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicase; helicase domain protein; SPTR: Putative ATP-dependent DNA helicase; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
 
     0.792
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.750
sigA
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.741
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.727
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.727
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.718
ADU47282.1
KEGG: ske:Sked_31380 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3027).
 
     0.611
ADU47280.1
Aldose 1-epimerase; COGs: COG2017 Galactose mutarotase; InterPro IPR008183; KEGG: fal:FRAAL2426 putative aldose-1-epimerase; PFAM: Aldose 1-epimerase; SPTR: Putative galactose mutarotase; PFAM: Aldose 1-epimerase.
       0.583
ADU47281.1
Cold-shock DNA-binding protein family; COGs: COG1278 Cold shock protein; InterPro IPR011129: IPR002059; KEGG: kse:Ksed_24110 cold-shock DNA-binding protein family; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; SPTR: Cold shock protein; PFAM: 'Cold-shock' DNA-binding domain.
       0.547
ADU50106.1
KEGG: ske:Sked_37910 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.468
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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