STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47298.1Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR011701; KEGG: kfl:Kfla_6159 major facilitator superfamily MFS_1; PFAM: major facilitator superfamily MFS_1; SPTR: Probable transporter; PFAM: Major Facilitator Superfamily. (410 aa)    
Predicted Functional Partners:
ADU47299.1
Iron (metal) dependent repressor, DtxR family; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001808: IPR001367: IPR007167; KEGG: kse:Ksed_24030 Mn-dependent transcriptional regulator; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; regulatory protein Crp; SPTR: Iron-dependent repressor, DxtR metalloregulatory family protein; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain.
       0.795
ADU48992.1
InterPro IPR019639; KEGG: kse:Ksed_08750 protein of unknown function (DUF2505); PFAM: Protein of unknown function DUF2505; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2505).
  
     0.465
ADU47297.1
KEGG: scl:sce1155 hypothetical protein; SPTR: Putative membrane protein.
       0.415
ADU46740.1
Pentapeptide repeat protein; COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: kfl:Kfla_5660 pentapeptide repeat protein; PFAM: pentapeptide repeat protein; SPTR: Pentapeptide repeat protein; PFAM: Protein of unknown function (DUF664); Pentapeptide repeats (8 copies).
  
     0.411
ADU47300.1
NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: kra:Krad_4554 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: Protein containing cell-wall hydrolase domain; PFAM: NlpC/P60 family.
       0.405
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.