STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47402.1Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: nca:Noca_0601 phage integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase family protein; PFAM: Phage integrase family. (308 aa)    
Predicted Functional Partners:
ADU47403.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: nca:Noca_0602 phage integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase family protein; PFAM: Phage integrase family.
     0.946
ADU47401.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: nca:Noca_0600 phage integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Phage integrase family protein; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.
 
     0.944
xerC
Tyrosine recombinase XerC subunit; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
     0.733
ADU46868.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR004107: IPR002104; KEGG: gbr:Gbro_4728 integrase family protein; PFAM: integrase family protein; integrase domain protein SAM domain protein; SPTR: Putative transposase; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family.
 
     0.706
ADU47324.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: nca:Noca_4725 phage integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase family protein; PFAM: Phage integrase family.
  
     0.656
ADU49984.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: nca:Noca_4725 phage integrase family protein; PFAM: integrase family protein; SPTR: Phage integrase family protein; PFAM: Phage integrase family.
  
     0.656
ADU49011.1
COGs: COG1040 amidophosphoribosyltransferase; InterPro IPR000836; KEGG: gob:Gobs_4282 phosphoribosyltransferase; PFAM: phosphoribosyltransferase; SPTR: Phosphoribosyltransferase; manually curated; PFAM: Phosphoribosyl transferase domain.
   
    0.465
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.455
ADU48348.1
COGs: COG0287 Prephenate dehydrogenase; InterPro IPR003099: IPR002912; KEGG: kra:Krad_3118 prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; amino acid-binding ACT domain protein; SPTR: Prephenate dehydrogenase; PFAM: Prephenate dehydrogenase; ACT domain.
  
    0.410
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.