STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
ADU47436.1Transglycosylase-like domain protein; COGs: COG3583 conserved hypothetical protein; InterPro IPR011098: IPR007137: IPR010618; KEGG: kfl:Kfla_5728 transglycosylase domain protein; PFAM: Transglycosylase-like domain protein; G5 domain protein; protein of unknown function DUF348; SPTR: Putative uncharacterized protein; PFAM: Transglycosylase-like domain; Domain of unknown function (DUF348); G5 domain. (389 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.915
ispE
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.709
ADU47435.1
Hydrolase, TatD family; COGs: COG0084 Mg-dependent DNase; InterPro IPR001130: IPR012278: IPR015991; KEGG: kse:Ksed_03330 hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; SPTR: Putative uncharacterized protein; TIGRFAM: hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family.
     
 0.695
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.545
ADU48651.1
Lipoprotein LpqB, GerMN domain; InterPro IPR019606: IPR018911; KEGG: kra:Krad_3401 hypothetical protein; PFAM: Lipoprotein LpqB, GerMN domain; Spore germination protein-like Gmad2, bacteria; SPTR: Putative uncharacterized protein; PFAM: Sporulation and spore germination; Immunoglobulin-like domain of bacterial spore germination.
  
     0.538
ADU47439.1
COGs: COG0488 ATPase components of ABC transporter with duplicated ATPase domains; InterPro IPR003593: IPR003439: IPR017871; KEGG: kse:Ksed_03410 ATPase component of ABC transporters with duplicated ATPase domain; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter, ATP-binding subunit; PFAM: ABC transporter.
     
 0.521
ADU46837.1
Alpha/beta hydrolase fold protein; InterPro IPR000073; KEGG: sco:SCO0635 hypothetical protein; PFAM: alpha/beta hydrolase fold; SPTR: Putative uncharacterized protein; PFAM: alpha/beta hydrolase fold.
  
     0.443
ADU48843.1
ErfK/YbiS/YcfS/YnhG family protein; InterPro IPR002477: IPR005490; KEGG: nca:Noca_0518 peptidoglycan binding domain-containing protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; SPTR: Lipoprotein; PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain.
  
   
 0.443
ADU46622.1
Protein of unknown function DUF881; COGs: COG3879 conserved hypothetical protein; InterPro IPR010273; KEGG: kra:Krad_0026 protein of unknown function DUF881; PFAM: protein of unknown function DUF881; SPTR: Putative uncharacterized protein; PFAM: Bacterial protein of unknown function (DUF881).
  
     0.436
ADU46689.1
COGs: COG0768 Cell division protein FtsI/penicillin-binding protein 2; InterPro IPR007887: IPR001460: IPR002137; KEGG: nca:Noca_4600 penicillin-binding protein, transpeptidase; PFAM: penicillin-binding protein transpeptidase; NTF2 domain protein transpeptidase; SPTR: Penicillin-binding protein, transpeptidase; PFAM: Penicillin binding protein transpeptidase domain; NTF2-like N-terminal transpeptidase domain; Penicillin-binding Protein dimerisation domain.
 
     0.418
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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