STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47650.1Sigma-70 region 4 type 2; InterPro IPR013249; KEGG: mav:MAV_0606 hypothetical protein; PFAM: Sigma-70 region 4 type 2; SPTR: Putative uncharacterized protein. (205 aa)    
Predicted Functional Partners:
ADU47647.1
KEGG: mkm:Mkms_4774 hypothetical protein; SPTR: Putative uncharacterized protein.
 
   
 0.919
ADU47651.1
KEGG: sro:Sros_3874 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF419).
       0.506
ADU47649.1
KEGG: ach:Achl_3443 spore coat protein CotH; SPTR: Spore coat protein CotH.
       0.439
ADU49232.1
KEGG: sma:SAV_48 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.420
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.