STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADU47832.1Drug resistance transporter, EmrB/QacA subfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR004638: IPR001411: IPR011701; KEGG: stp:Strop_1086 EmrB/QacA family drug resistance transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Putative transporter; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily. (530 aa)    
Predicted Functional Partners:
ADU49931.1
Extracellular solute-binding protein family 5; COGs: COG4166 ABC-type oligopeptide transport system periplasmic component; InterPro IPR000914; KEGG: stp:Strop_2462 4-phytase; PFAM: extracellular solute-binding protein family 5; SPTR: 4-phytase; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
   
    0.575
ADU47831.1
RDD domain containing protein; InterPro IPR018929: IPR010432; KEGG: kra:Krad_3769 RDD domain containing protein; PFAM: RDD domain containing protein; Protein of unknown function DUF2510; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2510); RDD family.
 
     0.519
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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