STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47859.1Protein of unknown function DUF161; COGs: COG2364 membrane protein; InterPro IPR003740; KEGG: bcv:Bcav_3925 protein of unknown function DUF161; PFAM: protein of unknown function DUF161; SPTR: Putative integral membrane protein; PFAM: Uncharacterized BCR, YitT family COG1284. (228 aa)    
Predicted Functional Partners:
ADU47858.1
COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR000524: IPR004839; KEGG: kfl:Kfla_5648 transcriptional regulator, GntR family with aminotransferase domain protein; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: Transcriptional regulator, GntR family with aminotransferase domain protein; PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II.
 
     0.799
ADU47860.1
Putative F420-dependent oxidoreductase; COGs: COG2141 Coenzyme F420-dependent N5 N10-methylene tetrahydromethanopterin reductase; InterPro IPR019952: IPR016048; KEGG: bcv:Bcav_4065 luciferase-like monooxygenase; PFAM: Luciferase-like, subgroup; SPTR: Putative uncharacterized protein; TIGRFAM: putative F420-dependent oxidoreductase; PFAM: Luciferase-like monooxygenase; TIGRFAM: probable F420-dependent oxidoreductase, Rv1855c family.
       0.762
ADU47857.1
FAD dependent oxidoreductase; COGs: COG2072 flavoprotein involved in K+ transport; InterPro IPR000103: IPR013027: IPR006076; KEGG: ach:Achl_2135 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: FAD dependent oxidoreductase; SPTR: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
       0.494
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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