STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47868.1Choloyl-CoA hydrolase; COGs: COG1946 Acyl-CoA thioesterase; InterPro IPR003703; KEGG: aau:AAur_2394 acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; PRIAM: Choloyl-CoA hydrolase; SPTR: Acyl-CoA thioesterase II; PFAM: Acyl-CoA thioesterase; TIGRFAM: acyl-CoA thioesterase II. (345 aa)    
Predicted Functional Partners:
ADU47869.1
ATP-dependent DNA helicase, RecQ family; COGs: COG0514 Superfamily II DNA helicase; InterProIPR018329: IPR002464: IPR011545: IPR001650: IPR 014001: IPR014021; KEGG: kse:Ksed_06850 ATP-dependent DNA helicase RecQ; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: helicase domain protein; DEAD-like helicase; SPTR: ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family.
       0.774
ADU47870.1
Thioesterase superfamily protein; COGs: COG0824 thioesterase; InterPro IPR006683; KEGG: kse:Ksed_08950 predicted thioesterase; PFAM: thioesterase superfamily protein; SPTR: Putative uncharacterized protein; PFAM: Thioesterase superfamily.
     
 0.734
ADU47871.1
KEGG: kse:Ksed_08960 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.671
pdxS
Pyridoxal phosphate synthase yaaD subunit; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family.
  
  
 0.600
pdxT
Pyridoxal phosphate synthase yaaE subunit; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS.
     
 0.589
ADU49694.1
COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR008266: IPR002575; KEGG: nfa:nfa34090 putative phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: Putative phosphotransferase; PFAM: Phosphotransferase enzyme family.
 
  
 0.539
ADU49693.1
COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR000169: IPR006092: IPR006091: IPR006090; KEGG: tbi:Tbis_2866 acyl-CoA dehydrogenase domain-containing protein; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Acyl-CoA dehydrogenase domain protein; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
  
 
 0.476
ADU48412.1
COGs: COG1960 Acyl-CoA dehydrogenase; InterPro IPR006091: IPR006090: IPR006089; KEGG: sma:SAV_2123 acyl-CoA dehydrogenase; PFAM: acyl-CoA dehydrogenase domain-containing protein; SPTR: Putative acyl-CoA dehydrogenase; PFAM: Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain.
  
 
 0.400
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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