STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47953.1KEGG: bcv:Bcav_3285 hypothetical protein; SPTR: Putative uncharacterized protein. (99 aa)    
Predicted Functional Partners:
ADU47954.1
InterPro IPR010427; KEGG: bcv:Bcav_3284 protein of unknown function DUF1023; PFAM: protein of unknown function DUF1023; SPTR: Putative uncharacterized protein; PFAM: Alpha/beta hydrolase of unknown function (DUF1023).
       0.773
ADU47955.1
KEGG: sen:SACE_5911 TPR repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
       0.572
ADU47952.1
Peptidoglycan-binding lysin domain; InterPro IPR018392; KEGG: kse:Ksed_17220 LysM domain-containing protein; PFAM: Peptidoglycan-binding lysin domain; SPTR: Putative uncharacterized protein; PFAM: LysM domain.
       0.410
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.