STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47961.1COGs: COG2421 acetamidase/formamidase; InterPro IPR004304; KEGG: gob:Gobs_1964 acetamidase/formamidase; PFAM: Acetamidase/Formamidase; SPTR: Acetamidase/Formamidase; PFAM: Acetamidase/Formamidase family. (374 aa)    
Predicted Functional Partners:
ADU47962.1
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR002347: IPR020904: IPR002198; KEGG: msm:MSMEG_4382 dehydrogenase/reductase SDR family protein member 10; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: Dehydrogenase/reductase SDR family protein member 10; PFAM: short chain dehydrogenase.
 
    0.835
ADU47959.1
Helix-turn-helix domain protein; InterPro IPR001387; KEGG: kfl:Kfla_0788 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family; PFAM: Helix-turn-helix.
       0.689
ADU47960.1
HipA N-terminal domain protein; COGs: COG3550 conserved hypothetical protein; InterPro IPR017508: IPR012894: IPR012893; KEGG: kfl:Kfla_0789 HipA N-terminal domain protein; PFAM: HipA domain protein; SPTR: HipA N-terminal domain protein; TIGRFAM: HipA N-terminal domain protein; PFAM: HipA-like C-terminal domain; HipA-like N-terminal domain; TIGRFAM: HipA N-terminal domain.
       0.689
ADU49969.1
Cupin 2 conserved barrel domain protein; COGs: COG4101 mannose-6-phosphate isomerase; InterPro IPR013096; KEGG: nca:Noca_2772 cupin 2 domain-containing protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2, conserved barrel domain protein; manually curated; PFAM: Cupin domain.
  
     0.459
ADU47963.1
Protein of unknown function DUF1345; COGs: COG4291 membrane protein; InterPro IPR009781; KEGG: rer:RER_34620 hypothetical protein; PFAM: protein of unknown function DUF1345; SPTR: Conserved hypothetical membrane protein; PFAM: Protein of unknown function (DUF1345).
 
     0.457
ADU48340.1
Isochorismatase hydrolase; COGs: COG1335 Amidase related to nicotinamidase; InterPro IPR003881: IPR000868; KEGG: sro:Sros_6622 isochorismatase hydrolase; PFAM: isochorismatase hydrolase; SPTR: Isochorismatase hydrolase; PFAM: Isochorismatase family.
 
    0.417
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.