STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU47983.1UspA domain-containing protein; InterPro IPR006015: IPR006016; KEGG: sna:Snas_3659 UspA domain-containing protein; PFAM: UspA domain-containing protein; SPTR: UspA domain protein; PFAM: Universal stress protein family. (311 aa)    
Predicted Functional Partners:
ADU47984.1
NERD domain protein; InterPro IPR011528; KEGG: mgi:Mflv_5176 hypothetical protein; PFAM: NERD domain protein; SPTR: Putative uncharacterized protein; PFAM: Nuclease-related domain; Uncharacterized conserved protein (DUF2075).
       0.596
ADU47982.1
COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR001395; KEGG: ske:Sked_15540 predicted oxidoreductase, aryl-alcohol dehydrogenase like protein; PFAM: aldo/keto reductase; SPTR: K+ channel beta subunit; PFAM: Aldo/keto reductase family.
  
    0.523
ADU47981.1
Ribonuclease BN; COGs: COG1295 membrane protein; InterPro IPR017039: IPR004664; KEGG: rop:ROP_32170 putative ribonuclease; PFAM: ribonuclease BN; SPTR: Putative ribonuclease; TIGRFAM: ribonuclease BN; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN).
  
    0.495
ADU47985.1
COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006015: IPR006016; KEGG: saq:Sare_1891 UspA domain-containing protein; PFAM: UspA domain-containing protein; SPTR: Putative Usp family protein; PFAM: Universal stress protein family.
 
    
0.489
hpf
Sigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
   
  
 0.446
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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