Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADU48046.1KEGG: sti:Sthe_2375 hypothetical protein; SPTR: Putative uncharacterized protein. (354 aa)    
Predicted Functional Partners:
ADU48047.1
COGs: COG0564 Pseudouridylate synthase 23S RNA-specific; InterPro IPR006224: IPR006145; KEGG: sen:SACE_3351 ribosomal pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: Putative RNA pseudouridylate synthase; PFAM: RNA pseudouridylate synthase.
  
    0.781
ADU48045.1
COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004805: IPR004013: IPR011708: IPR004365: IPR 003141; KEGG: kse:Ksed_16450 DNA polymerase III subunit alpha; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; PRIAM: DNA-directed DNA polymerase; SMART: phosphoesterase PHP domain protein; SPTR: DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; OB-fold nucleic acid binding domain; TIGRFAM: DNA-directed DNA polymerase III (polc).
       0.581
ADU48048.1
Endonuclease/exonuclease/phosphatase; COGs: COG2374 extracellular nuclease; InterPro IPR005135; KEGG: azo:azo1484 putative extracellular nuclease; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Putative extracellular nuclease; PFAM: Endonuclease/Exonuclease/phosphatase family.
       0.468
ADU48665.1
KEGG: xce:Xcel_2206 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: PemK-like protein.
  
     0.443
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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