STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbpAElectron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. (100 aa)    
Predicted Functional Partners:
ADU48200.1
Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
       0.690
ADU48492.1
Response regulator receiver; InterPro IPR001789; KEGG: bcv:Bcav_1893 response regulator receiver protein; SMART: response regulator receiver; SPTR: Putative two-component system response regulator; PFAM: Response regulator receiver domain.
  
     0.539
pgk
COGs: COG0126 3-phosphoglycerate kinase; InterPro IPR001576: IPR015911; KEGG: kse:Ksed_13120 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
       0.514
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
       0.514
ADU48701.1
InterPro IPR000182; KEGG: kfl:Kfla_2969 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Putative uncharacterized protein; PFAM: Acetyltransferase (GNAT) family.
  
     0.506
ADU48561.1
Protein of unknown function DUF164; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: tcu:Tcur_1674 protein of unknown function DUF164; PFAM: protein of unknown function DUF164; SPTR: Zn-ribbon protein-like protein; manually curated; PFAM: Putative zinc ribbon domain.
  
     0.497
ADU48422.1
KEGG: bcv:Bcav_1965 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3000).
  
     0.492
ADU49216.1
YbaK/prolyl-tRNA synthetase associated region; COGs: COG2606 conserved hypothetical protein; InterPro IPR007214; KEGG: kse:Ksed_02710 hypothetical protein; PFAM: YbaK/prolyl-tRNA synthetase associated region; SPTR: Uncharacterized conserved protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain.
  
     0.489
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
 
     0.483
ADU48197.1
COGs: COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; InterProIPR020832: IPR020830: IPR020831: IPR020828: IPR 020829: IPR006424; KEGG: kfl:Kfla_3261 glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; PRIAM: Glyceraldehyde-3-phosphate dehydrogenase (phosphorylating); SPTR: Glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydroge [...]
       0.433
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.