STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADU48245.1Protein of unknown function DUF107; COGs: COG1585 Membrane protein implicated in regulation of membrane protease activity; InterPro IPR002810; KEGG: kra:Krad_3088 protein of unknown function DUF107; PFAM: protein of unknown function DUF107; SPTR: Putative integral membrane protein; PFAM: NfeD-like. (148 aa)    
Predicted Functional Partners:
ADU48246.1
SPFH domain, Band 7 family protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107: IPR001972: IPR018080; KEGG: bcv:Bcav_2313 band 7 protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Putative secreted protein; PFAM: SPFH domain / Band 7 family.
 
  
 0.913
ADU48284.1
Hypothetical protein; KEGG: cai:Caci_1250 putative cellulose-binding protein; SPTR: Putative cellulose-binding protein.
  
  
 0.808
ADU47314.1
COGs: COG1010 Precorrin-3B methylase; InterPro IPR000878: IPR006364: IPR006363; KEGG: nda:Ndas_1624 precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; SPTR: Precorrin-3B C17-methyltransferase; TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase.
  
    0.772
cobS
Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
   
    0.753
ADU48243.1
KEGG: kse:Ksed_13550 hypothetical protein; SPTR: Putative uncharacterized protein.
     
 0.681
ADU48244.1
ABC transporter related protein; COGs: COG1119 ABC-type molybdenum transport system ATPase component/photorepair protein PhrA; InterPro IPR003593: IPR003439; KEGG: kse:Ksed_13560 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA; PFAM: ABC transporter.
       0.621
ADU46851.1
SPFH domain, Band 7 family protein; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107: IPR001972; KEGG: pac:PPA1973 stomatin/prohibitin-like protein; PFAM: band 7 protein; SMART: band 7 protein; SPTR: Putative uncharacterized protein; PFAM: SPFH domain / Band 7 family.
 
  
 0.598
ADU48247.1
Protein of unknown function DUF81; InterPro IPR002781; KEGG: nfa:nfa3090 hypothetical protein; PFAM: protein of unknown function DUF81; SPTR: Putative uncharacterized protein; PFAM: Sulfite exporter TauE/SafE.
       0.557
ADU48249.1
tRNA/rRNA methyltransferase (SpoU); COGs: COG0566 rRNA methylase; InterPro IPR001537; KEGG: kse:Ksed_13580 rRNA methylase; PFAM: tRNA/rRNA methyltransferase (SpoU); SPTR: RRNA methyltransferase; PFAM: SpoU rRNA Methylase family.
       0.544
ADU48994.1
COGs: COG3296 conserved hypothetical protein; KEGG: mcu:HMPREF0573_11485 hypothetical protein; SPTR: Putative uncharacterized protein.
   
  
 0.515
Your Current Organism:
Intrasporangium calvum
NCBI taxonomy Id: 710696
Other names: I. calvum DSM 43043, Intrasporangium calvum DSM 43043, Intrasporangium calvum IFO 12989, Intrasporangium calvum NBRC 12989, Intrasporangium calvum str. DSM 43043, Intrasporangium calvum strain DSM 43043
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